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    28 July 2022, Volume 29 Issue 4 Previous Issue    Next Issue

    Letter
    Review
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    Letter
    Feasibility of Improving Unmanned Aerial Vehicle-Based Seeding Efficiency by Using Rice Varieties with Low Seed Weight
    Wang Xinyu, Yang Guodong, Pan Xiangcheng, Xiang Hongshun, Peng Shaobing, Xu Le
    2022, 29(4): 299-303.  DOI: 10.1016/j.rsci.2022.05.001
    Abstract ( )   HTML ( )   PDF (10690KB) ( )  
    Unmanned aerial vehicle (UAV) has offered a promising platform for rice direct seeding that can substantially reduce labor input in the crop establishment process. However, the insufficient payload capacity of UAV-based seeders is currently limiting its intensive and large-scale use for rice direct seeding. This study indicated a large variation in seed weight across varieties, ranging from 15.0 to 36.5 mg and 14.0 to 31.3 mg for inbred and hybrid varieties, respectively, with average seed weights of 25.3 mg for inbred and 24.7 mg for hybrid varieties. Seed weights of 160 out of 4 106 inbred varieties and 17 out of 311 hybrid varieties ranged from 15.0 to 20.0 mg. Reducing seed weight from 25.0 to 15.0 mg increased the seeding area per UAV flight by 67% regardless of inbred and hybrid varieties, although the absolute increase in seeding area for hybrid variety was greater than that for inbred variety because of the difference in seeding rate. The grain yield of inbred varieties was reduced when the seed weight was less than 24 mg. Moreover, 87% of inbred varieties with a seed weight ≤ 20 mg were distributed in South China where rice consumers prefer small rice grains. Therefore, the use of low-seed-weight inbred varieties for improving UAV seeding efficiency might be considered in South China. Unlike inbred rice, 64% of hybrid varieties had higher grain weights compared with their seed weights, and reducing seed weights did not necessarily cause yield loss. Therefore, the small-seed-and-large-grain strategy in hybrid rice could be used for improving UAV seeding efficiency without yield loss. This strategy can be considered for improving UAV seeding efficiency in rice production regions other than South China.
    Genetic Variation for Anaerobic Germination and Emergence from Deeper Soil Depth in Oryza nivara Accessions
    Revanayya M. Gothe, Dharminder Bhatia, Akashdeep Kamboj, Nitika Sandhu, Buta Singh Dhillon
    2022, 29(4): 304-308.  DOI: 10.1016/j.rsci.2022.02.001
    Abstract ( )   HTML ( )   PDF (3134KB) ( )  
    Review
    Arsenic Accumulation in Rice: Sources, Human Health Impact and Probable Mitigation Approaches
    Md Rokonuzzaman, Li Wai Chin, Man Yu Bon, Tsang Yiu Fai, Ye Zhihong
    2022, 29(4): 309-327.  DOI: 10.1016/j.rsci.2022.02.002
    Abstract ( )   HTML ( )   PDF (690KB) ( )  

    The human body loading with arsenic (As) through rice consumption is a global health concern. There is a crucial need to limit As build-up in rice, either by remediating As accumulation in soils or reducing As levels in irrigation water. Several conventional approaches have been utilized to alleviate the As accumulation in rice. However, except for some irrigation practices, those approaches success and the adoption rate are not remarkable. This review presents human health risks posed due to consumption of As contaminated rice, evaluates different biomarkers for tracing As loading in the human body, and discusses the latest advancement in As reducing technologies emphasizing the application of seed priming, nanotechnology, and biochar application for limiting As loading in rice grains. We also evaluate different irrigation techniques to reduce As accumulation in rice. Altering water management regimes significantly reduces grain As accumulation. Bio- and nano-priming of rice seeds improve germination and minimize As translocation in rice tissues by protecting cell membrane, building pool around seed coat, methylation and volatilization, or quenching harmful effects of reactive oxygen species. Nanoparticle application in the form of nano-adsorbents or nano-fertilizers facilitates nano-remediation of As through the formation of Fe plaque or sorption or oxidation process. Incorporating biochar in the rice fields significantly reduces As through immobilization, physical adsorption, or surface complexation. In conclusion, As content in cooked rice depends on irrigation source and raw rice As level.

    Weed Management in Rainfed Upland Rice Fields under Varied Agro-Ecologies in Nigeria
    Oyebanji O. Alagbo, Oluyemisi A. Akinyemiju, Bhagirath S. Chauhan
    2022, 29(4): 328-339.  DOI: 10.1016/j.rsci.2021.11.004
    Abstract ( )   HTML ( )   PDF (502KB) ( )  

    The demand for rice to meet the dietary need in low-income countries is expected to witness an exponential rise as the population increases. Meeting the rice demand domestically has remained challenging due to significant yield loss caused by several biotic and abiotic factors. Among these factors, one of the most important is the high weed pressure that ravages the upland rice ecology. In Nigeria, several independent weed control techniques, such as physical, chemical and cultural methods, have been recommended and adopted for weed control across varying rice upland ecologies. However, outcomes of these approaches when used independently have not consistently led to an increase in yield. There remains an outstanding deficit between the actual yield and the potential rice yield. This review aimed to identify potential research gaps, and quest effective and sustainable weed management strategies in smallholder upland rice farming systems in Nigeria. A critical analysis of studies suggests the potential of sustainable weed management practices if adopted and adapted smartly in different upland ecologies in Nigeria. Competitiveness of upland rice against weeds can be enhanced through strategic integration of weed competitive cultivars, optimum nitrogen application timings (within weed-free periods), uniform plant spacing, and high seeding rates, with conventional herbicide/manual weed control practices. However, such management practices can only be engaged where inputs are supplied on time and the technical know-how is extended to farmers. The review equally highlights potential research gaps for further studies.

    Research Paper
    RPA-Assisted Cas12a System for Detecting Pathogenic Xanthomonas oryzae, a Causative Agent for Bacterial Leaf Blight Disease in Rice
    Kittisak Buddhachat, Nattaporn Sripairoj, Onchira Ritbamrung, Phithak Inthima, Kumrop Ratanasut, Thanita Boonsrangsom, Tepsuda Rungrat, Pongsanat Pongcharoen, Kawee Sujipuli
    2022, 29(4): 340-352.  DOI: 10.1016/j.rsci.2021.11.005
    Abstract ( )   HTML ( )   PDF (36612KB) ( )  

    Xanthomonas oryzae pv. oryzae (Xoo) is a widespread pathogen causing bacterial leaf blight (BLB) disease, devastating rice productivity in many cultivated areas of Thailand. A specific and simple method for Xoo detection is required to improve surveillance of disease transmission and outbreak. This study developed a recombinase polymerase amplification (RPA) assay assisted with CRISPR-cas12a assay (RAC) for Xoo detection from bacterial cell suspension of infected rice samples without DNA extraction. The efficiency of the RAC system for Xoo detection using either Xoo80 or Xoo4009 locus was optimized to amplify and determine the sensitivity and specificity using a Xoo DNA template from bacterial cell suspension of infected rice samples without DNA extraction. The RAC system using the Xoo4009 locus gave a higher specificity than Xoo80 locus, because only Xoo species was amplified positive RPA product with fluorescence signal by cas12a digestion, which indicated no cross reactivity. Optimal RAC using the Xoo4009 locus enabled diagnosis of Xoo presence from both plant extracted samples of Xoo artificially inoculated rice leaves within 3 d post-inoculation without symptomatic BLB appearance, and Xoo naturally infected rice. Findings exhibited that RAC using the Xoo4009 locus offered sensitivity, specificity and simplicity for Xoo detection, with low intensities of Xoo-DNA (1 × 103 copies/µL) and Xoo-cell (2.5 × 103 cfu/mL). This developed RAC system showed significantly potential for Xoo detection at point-of-care application for early signs of BLB disease outbreak in rice fields.

    A β-ketoacyl-CoA Synthase OsCUT1 Confers Increased Drought Tolerance in Rice
    Gao Xiuying, Zhang Ye, Zhang Hongsheng, Huang Ji
    2022, 29(4): 353-362.  DOI: 10.1016/j.rsci.2021.12.009
    Abstract ( )   HTML ( )   PDF (25500KB) ( )  

    Drought stress is one of the major environmental factors affecting crop growth and productivity. Cuticular wax plays essential roles in protecting plants from environmental stress via forming a hydrophobic barrier on leaf epidermis. In this study, we analyzed nine members (OsCUT1?OsCUT9) of β-ketoacyl-CoA synthase, the rate-limiting key enzyme for cuticular wax synthesis in rice by homology search and domain prediction. The expression levels of OsCUT genes under different abiotic stresses were investigated and OsCUT1 down-regulated by abiotic stress was selected for further function validation. Compared to the wild type, overexpression of OsCUT1 (OX-OsCUT1) exhibited significantly increased drought resistance. Epicuticular wax was increased on the leaf surface of OX-OsCUT1 and the chlorophyll leaching experiment showed that the cuticular permeability was decreased in the OX-OsCUT1 plants. Moreover, overexpression of OsCUT1 didn’t result in the significant changes of major agronomic traits. In total, these results suggested that OsCUT1 is a promising gene for engineering rice plants with enhanced drought tolerance.

    Polycomb Repressive Complex 2-Mediated H3K27 Trimethylation Is Required for Pathogenicity in Magnaporthe oryzae
    Wu Zhongling, Qiu Jiehua, Shi Huanbin, Lin Chuyu, Yue Jiangnan, Liu Zhiquan, Xie Wei, Naweed I. Naqvi, Kou Yanjun, Tao Zeng
    2022, 29(4): 363-374.  DOI: 10.1016/j.rsci.2021.11.006
    Abstract ( )   HTML ( )   PDF (1106KB) ( )  

    Polycomb repressive complex 2 (PRC2) contributes to catalyze the methylation of histone H3 at lysine 27 and plays vital roles in transcriptional silencing and growth development in various organisms. In Magnaporthe oryzae, histone H3K27 is found to associate with altered transcription of in planta induced genes. However, it is still unknown whether and how H3K27me3 modification is involved in pathogenicity to rice and stress response. In this study, we found that core subunits of PRC2, Kmt6-Suz12-Eed, were required for fungal pathogenicity to rice in M. oryzae. Kmt6-Suz12-Eed localized in the nuclei and was necessary for the establishment of H3K27me3 modification. With ChIP-seq analysis, 9.0% of genome regions enriched with H3K27me3 occupancy, which corresponded to 1033 genes in M. oryzae. Furthermore, deletion of Kmt6, Suz12 or Eed altered genome-wide transcriptional expression, while the de-repression genes in the ∆kmt6 strain were highly associated with H3K27me3 occupancy. Notably, plenty of genes which encode effectors and secreted enzymes, secondary metabolite synthesis genes, and cell wall stress-responsive genes were directly occupied with H3K27me3 modification and de-repression in the ∆kmt6 strain. These results elaborately explained how PRC2 was required for pathogenicity, which is closely related to effector modulated host immunity and host environment adaption.

    Genome-Wide Analysis of von Willebrand Factor A Gene Family in Rice for Its Role in Imparting Biotic Stress Resistance with Emphasis on Rice Blast Disease
    Suhas Gorakh Karkute, Vishesh Kumar, Mohd Tasleem, Dwijesh Chandra Mishra, Krishna Kumar Chaturvedi, Anil Rai, Amitha Mithra Sevanthi, Kishor Gaikwad, Tilak Raj Sharma, Amolkumar U. Solanke
    2022, 29(4): 375-384.  DOI: 10.1016/j.rsci.2021.11.007
    Abstract ( )   HTML ( )   PDF (2027KB) ( )  

    von Willebrand factor A (vWA) genes are well characterized in humans except for few BONZAI genes, but the vWA genes are least explored in plants. Considering the novelty and vital role of vWA genes, this study aimed at characterization of vWA superfamily in rice. Rice genome was found to have 40 vWA genes distributed across all the 12 chromosomes, and 20 of the 40 vWA genes were unique while the remaining shared large fragment similarities with each other, indicating gene duplication. In addition to vWA domain, vWA proteins possess other different motifs or domains, such as ubiquitin interacting motif in protein degradation pathway, and RING finger in protein-protein interaction. Expression analysis of vWA genes in available expression data suggested that they probably function in biotic and abiotic stress responses including hormonal response and signaling. The frequency of transposon elements in the entire 3K rice germplasm was negligible except for 9 vWA genes, indicating the importance of these genes in rice. Structural and functional diversities showed that the vWA genes in a blast-resistant rice variety Tetep had huge variations compared to blast-susceptible rice varieties HP2216 and Nipponbare. qRT-PCR analysis of vWA genes in Magnaporthe oryzae infected rice tissues indicated OsvWA9, OsvWA36, OsvWA37 and OsvWA18 as the optimal candidate genes for disease resistance. This is the first attempt to characterize vWA gene family in plant species.

    Selenium Alleviates Carbohydrate Metabolism and Nutrient Composition in Arsenic Stressed Rice Plants
    Sheetal Bhadwal, Sucheta Sharma
    2022, 29(4): 385-396.  DOI: 10.1016/j.rsci.2021.11.008
    Abstract ( )   HTML ( )   PDF (10826KB) ( )  

    This study reported the influence of selenium (Se) on carbohydrate composition and some related enzymes and nutrient compositions of arsenic (As) stressed rice plants. Rice plants of cultivar PR126 were grown on soil amended with As in a range of 25-100 μmol/kg with and without 0.5 or 1.0 mg/kg Se. Total soluble sugars (TSS) and reducing sugars (RS) increased in leaves of As stressed plants at the tillering and grain filling stages whereas sucrose and starch contents showed the reverse trend. Se supplementation to As stressed plants further increased TSS and RS, and enhanced sucrose phosphate synthase activity in rice leaves, thus improving sucrose content and the tolerance to As stress of the plants. Se alone or in combination with As resulted in lower As accumulation in rice husk and grains, and the highest reduction was observed in Se applied at 1.0 mg/kg compared to the corresponding As treatments alone. As may limit the accumulations of Na, Mg, K, Ca, Fe, Zn and Mn in rice grains, which are essential for humans. Binary application of different combinations of As and Se protected the plants against As and increased the mineral content in rice grains. Addition of Se in As treated soil significantly alleviated As stress by enhancing grain yields compared to the corresponding As treatment. It is concluded that Se induced amelioration of the toxic impact of As in rice either by modulating carbohydrate composition and/or nutrient uptake is one of the mechanisms to alleviate As stress in plants.